2023

• PublishedInfluence of mobile genetic elements and insertion sequences in long- and short-term adaptive processes of Acidithiobacillus ferrooxidans strains
  Moya-Beltrán, A., Gajdosik, M., Rojas-Villalobos, C., Beard, S., Mandl, M., Silva-García, D., Johnson, D. B., Ramirez, P., Quatrini, R. & Kucera, J., 5 Jul 2023, In: Scientific Reports. 13, 1, 10876.
  Research output: Contribution to journal › Article › peer-review
• PublishedMineralogy affects prokaryotic community composition in an acidic metal mine
  Kelly, L., Rivett, D. W., Pakostova, E., Creer, S., Cotterell, T. & Johnson, B., 1 Jan 2023, In: Microbiological Research. 266, 127257.
  Research output: Contribution to journal › Article › peer-review

2022

• PublishedContinuous removal of sulfate and metals from acidic mining-impacted waters at low temperature using a sulfate-reducing bacterial consortium
  Virpiranta, H., Sotaniemi, V.-H., Leiviskä, T., Taskila, S., Rämö, J., Johnson, D. B. & Tanskanen, J., 1 Jan 2022, In: Chemical Engineering Journal. 427, 132050.
  Research output: Contribution to journal › Article › peer-review

2021

• PublishedBioleaching of Transition Metals From Limonitic Laterite Deposits and Reassessment of the Multiple Roles of Sulfur-Oxidizing Acidophiles in the Process
  Johnson, D. B., Smith, S. & Santos, A. L., 26 Jul 2021, In: Frontiers in Microbiology. 12, 703177.
  Research output: Contribution to journal › Article › peer-review
• PublishedDesign and Operation of Empirical Manganese-Removing Bioreactors and Integration into a Composite Modular System for Remediating and Recovering Metals from Acidic Mine Waters
  Santos, A. L. & Johnson, B., 10 May 2021, In: Applied Sciences. 11, 9, 4287.
  Research output: Contribution to journal › Article › peer-review
• PublishedEvolution of Type IV CRISPR-Cas Systems: Insights from CRISPR Loci in Integrative Conjugative Elements of Acidithiobacillia
  Moya-Beltrán, A., Makarova, K. S., Acuna, L. G., Wolf, Y., Covarrubias, P. C., Shmakov, S. A., Silva, C., Tolstoy, I., Johnson, B., Koonin, E. V. & Quatrini, R., 15 Oct 2021, In: The CRISPR Journal. 4, 5, p. 656-672
  Research output: Contribution to journal › Article › peer-review
• PublishedGenomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions
  Moya-Beltrán, A., Beard, S., Rojas-Villalobos, C., Issotta, F., Gallardo, Y., Ulloa, R., Giaveno, A., Degli Esposti, M., Johnson, D. B. & Quatrini, R., Nov 2021, In: The ISME Journal. 15, 11, p. 3221-3238
  Research output: Contribution to journal › Article › peer-review

2020

• PublishedA Model of Aerobic and Anaerobic Metabolism of Hydrogen in the Extremophile Acidithiobacillus ferrooxidans
  Kucera, J., Lochman, J., Bouchal, P., Pakostova, E., Mikulasek, K., Hedrich, S., Janiczek, O., Mandl, M. & Johnson, D. B., 30 Nov 2020, In: Frontiers in Microbiology. 11, 610836.
  Research output: Contribution to journal › Article › peer-review
• PublishedAcidithiobacillus ferrianus sp. nov. an ancestral extremely acidophilic and facultatively anaerobic chemolithoautotroph
  Norris, P. R., Falagán, C., Moya-Beltrán, A., Castro, M., Quatrini, R. & Johnson, D. B., Mar 2020, In: Extremophiles. 24, 2, p. 329-337 9 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedAcidophile Microbiology in Space and Time
  Johnson, D. B. & Quatrini, R., 21 Feb 2020, In: Current issues in molecular biology. 39, p. 63-76 14 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedBacterial and Archaeal Diversity in Sulfide-Bearing Waste Rock at Faro Mine Complex, Yukon Territory, Canada
  Pakostova, E., Johnson, D. B., Bao, Z., MacKenzie, P. M., Ptacek, C. J. & Blowes, D. W., 1 Jun 2020, In: Geomicrobiology Journal. 37, 6, p. 511-519
  Research output: Contribution to journal › Article › peer-review
• PublishedBioleaching of arsenic-rich cobalt mineral resources, and evidence for concurrent biomineralisation of scorodite during oxidative bio-processing of skutterudite
  Johnson, D. B., Dybowska, A., Schofield, P., Herrington, R., Smith, S. & Santos, A. L., 1 Aug 2020, In: Hydrometallurgy. 195, 105395.
  Research output: Contribution to journal › Article › peer-review
• PublishedBiological removal of sulfurous compounds and metals from inorganic wastewaters
  Johnson, B. & Santos, A. L., Oct 2020, Environmental Technologies to Treat Sulfur Pollution: Principles and Engineering. Lens, P. N. L. (ed.). 2nd ed. IWA Publishing, p. 215-246
  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
• PublishedCharacteristics of an Iron-Reducing, Moderately Acidophilic Actinobacterium Isolated from Pyritic Mine Waste, and Its Potential Role in Mitigating Mineral Dissolution in Mineral Tailings Deposits
  Nancucheo, I. & Johnson, D. B., 2 Jul 2020, In: Microorganisms . 8, 7, 90.
  Research output: Contribution to journal › Article › peer-review
• PublishedIsolation and characterization of a novel acidophilic zero-valent sulfur- and ferric iron-respiring Firmicute
  Holanda, R. & Johnson, D. B., 18 Aug 2020, In: Research in Microbiology. 171, 7, p. 215-221
  Research output: Contribution to journal › Article › peer-review
• PublishedRemoval of Zinc From Circum-Neutral pH Mine-Impacted Waters Using a Novel “Hybrid” Low pH Sulfidogenic Bioreactor
  Holanda, R. & Johnson, D. B., 10 Mar 2020, In: Frontiers in Environmental Science. 8, 22.
  Research output: Contribution to journal › Article › peer-review
• PublishedSulfur-enhanced reductive bioprocessing of cobalt-bearing materials for base metals recovery
  Araujo Santos, A. L., Dybowska, A., Schofield, P., Herrington, R. & Johnson, B., 1 Aug 2020, In: Hydrometallurgy. 195, 105396.
  Research output: Contribution to journal › Article › peer-review

2019

• PublishedAcidithiobacillus ferrooxidans
  Quatrini, R. & Johnson, D. B., 1 Mar 2019, In: Trends in Microbiology. 27, 3, p. 282-283 2 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedAcidithiobacillus sulfuriphilus sp. nov. an extremely acidophilic sulfur-oxidizing chemolithotroph isolated from a neutral pH environment
  Falagán, C., Moya-Beltrán, A., Castro, M., Quatrini, R. & Johnson, D. B., 1 Sept 2019, In: International Journal of Systematic Evolutionary Microbiology. 69, 9, p. 2907-2913 7 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedBioreductive Dissolution as a Pretreatment for Recalcitrant Rare-Earth Phosphate Minerals Associated with Lateritic Ores
  Nancucheo, I., Oliveira, G., Lopes, M. & Johnson, D. B., 26 Feb 2019, In: Minerals. 9, 3, 136.
  Research output: Contribution to journal › Article › peer-review
• PublishedDissimilatory reduction of sulfate and zero-valent sulfur at low pH and its significance for bioremediation and metal recovery
  Johnson, D. B. & Sánchez-Andrea, I., 10 Oct 2019, In: Advances in Microbial Physiology. 75, p. 205-231 27 p.
  Research output: Contribution to journal › Review article › peer-review
• PublishedEnrichment and isolation of acid-tolerant sulfate-reducing microorganisms in the anoxic, acidic hot spring sediments from Copahue volcano, Argentina
  Willis, G., Nancucheo, I., Hedrich, S., Giaveno, A., Donati, E. & Johnson, D. B., Dec 2019, In: Fems Microbiology Ecology. p. fiz175
  Research output: Contribution to journal › Article › peer-review
• PublishedExtremophiles and Acidic Environments
  Johnson, D. B. & Aguilera, A., 2019, Encyclopedia of Microbiology . 4tk ed. p. 206-227
  Research output: Chapter in Book/Report/Conference proceeding › Entry for encyclopedia/dictionary › peer-review
• PublishedMicrobial generation of sulfuric acid from granular elemental sulfur in laboratory-scale bioreactors
  Pakostova, E. & Johnson, D. B., Dec 2019, In: Hydrometallurgy. 190, 105152.
  Research output: Contribution to journal › Article › peer-review
• PublishedThe development and future impact on biotechnologies for mineral processing and metal recovery
  Johnson, B., Aug 2019, Proceedings of the 15th Biennial Meeting of the Society of Geology Applied to Mineral Deposits. p. 1516-1619
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedUpconversion of Cellulosic Waste Into a Potential “Drop in Fuel” via Novel Catalyst Generated Using Desulfovibrio desulfuricans and a Consortium of Acidophilic Sulfidogens
  Mikheenko, I. P., Gomez-Bolivar, J., Merroun, M. L., Macaskie, L. E., Sharma, S., Walker, M., Hand, R. A., Grail, B., Johnson, D. B. & Orozco, R. L., 10 May 2019, In: Frontiers in Microbiology. 10, 970.
  Research output: Contribution to journal › Article › peer-review

2018

• PublishedBio-processing of a saline, calcareous copper sulfide ore by sequential leaching
  Pakostova, E., Grail, B. M. & Johnson, D. B., Aug 2018, In: Hydrometallurgy. 179, p. 36-43
  Research output: Contribution to journal › Article › peer-review
• PublishedDesign and Application of a Low pH Upflow Biofilm Sulfidogenic Bioreactor for Recovering Transition Metals From Synthetic Waste Water at a Brazilian Copper Mine
  Santos, A. L. & Johnson, D. B., 30 Aug 2018, In: Frontiers in Microbiology. 9, 2051.
  Research output: Contribution to journal › Article › peer-review
• PublishedGrowth of Leptospirillum ferriphilum in sulfur medium in co-culture with Acidithiobacillus caldus
  Smith, S. & Johnson, D., Mar 2018, In: Extremophiles. 22, 2, p. 327-333
  Research output: Contribution to journal › Article › peer-review
• PublishedIdentification of trehalose as a compatible solute in different species of acidophilic bacteria
  Galleguillos, P. A., Grail, B. M., Hallberg, K. B., Demergasso, C. S. & Johnson, D. B., Oct 2018, In: Journal of Microbiology. 56, 10, p. 727-733 7 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedImplementation of biological and chemical techniques to recover metals from copper-rich leach solutions
  Hedrich, S., Kermer, R., Aubel, T., Martin, M., Schippers, A., Johnson, D. B. & Janneck, E., Aug 2018, In: Hydrometallurgy. 179, p. 274-281
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobiomes in extremely acidic environments: functionalities and interactions that allow survival and growth of prokaryotes at low pH
  Quatrini, R. & Johnson, D. B., Jun 2018, In: Current Opinion in Microbiology. 43, p. 139-147 9 p.
  Research output: Contribution to journal › Review article › peer-review
• PublishedSalt Stress-Induced Loss of Iron Oxidoreduction Activities and Reacquisition of That Phenotype Depend on rus Operon Transcription in Acidithiobacillus ferridurans
  Bonnefoy, V., Grail, B. M. & Johnson, D. B., Apr 2018, In: Applied and Environmental Microbiology. 84, 7
  Research output: Contribution to journal › Article › peer-review
• PublishedThe Evolution, Current Status, and Future Prospects of Using Biotechnologies in the Mineral Extraction and Metal Recovery Sectors
  Johnson, D. B., 8 Aug 2018, In: Minerals. 8, 8, 343.
  Research output: Contribution to journal › Article › peer-review
• PublishedThe significance of pH in dictating the relative toxicities of chloride and copper to acidophilic bacteria
  Falagan, C. & Johnson, D. B., Dec 2018, In: Research in Microbiology. 169, 10, p. 552-557
  Research output: Contribution to journal › Article › peer-review

2017

• PublishedAcidicapsa ferrireducens sp nov., Acidicapsa acidiphila sp nov., and Granulicella acidiphila sp nov.: novel acidobacteria isolated from metal-rich acidic waters
  Falagan, C., Foesel, B. & Johnson, B., May 2017, In: Extremophiles. 21, 3, p. 459-469
  Research output: Contribution to journal › Article › peer-review
• PublishedApproaches for Eliminating Bacteria Introduced during In Situ Bioleaching of Fractured Sulfidic Ores in Deep Subsurface
  Ballerstedt, H., Pakostova, E., Johnson, D. B. & Schippers, A., Aug 2017, In: Solid State Phenomena. 262, p. 70-74
  Research output: Contribution to journal › Article › peer-review
• PublishedBiologically-induced precipitation of aluminium in synthetic acid mine water
  Falagan Rodriguez, C., Yusta, I. & Johnson, B., 15 May 2017, In: Minerals Engineering. 106, p. 79-85
  Research output: Contribution to journal › Article › peer-review
• PublishedBiosynthesis of zinc sulfide quantum dots using waste off-gas from a metal bioremediation process
  Murray, A. J., Roussel, J., Rolley, J., Woodhall, F., Mikheenko, I. P., Johnson, D. B., Gomez-Bolivar, J., Merroun, M. L. & Macaskie, L. E., 2017, In: RSC Advances. 7, 35, p. 21484-21491
  Research output: Contribution to journal › Article › peer-review
• PublishedColumn Bioleaching of a Saline, Calcareous Copper Sulfide Ore
  Pakostova, E., Grail, B. & Johnson, D. B., Aug 2017, In: Solid State Phenomena. 262, p. 7-11
  Research output: Contribution to journal › Article › peer-review
• PublishedComparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes
  Tran, T. T. T., Mangenot, S., Magdelenat, G., Payen, E., Rouy, Z., Belahbib, H., Grail, B., Johnson, D. B., Bonnefoy, V. & Talla, E., 13 Jun 2017, In: Frontiers in Microbiology. 8, 1009.
  Research output: Contribution to journal › Article › peer-review
• PublishedDeconstructing and reconstructing microbial communities that promote the natural attenuation of acidic mine waters
  Johnson, B., 2 Apr 2017, In: Abstracts of papers - American Chemical Society. 253
  Research output: Contribution to journal › Meeting Abstract › peer-review
• PublishedDraft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366)
  Castro, M., Moya-Beltrán, A., Covarrubias, P. C., Gonzalez, M., Issotta, F., Nuñez, H., Acuña, L. G., Encina, G., Holmes, D. S., Johnson, D. B. & Quatrini, R., 15 Dec 2017, In: Standards in genomic sciences. 12, p. 77
  Research output: Contribution to journal › Article › peer-review
• PublishedEditorial: Recent Advances in Acidophile Microbiology: Fundamentals and Applications
  Johnson, D. B. & Schippers, A., 14 Mar 2017, In: Frontiers in Microbiology. 8, p. 428
  Research output: Contribution to journal › Article › peer-review
• PublishedIn-situ Bioextraction of Industry Metals from deep Ore Deposits to secure EU Resource Supply
  Matthies, R., Hejny, H., Hirsch, K., Kahnt, R., Marten, H. & Johnson, D. B., 2017, In: Georesources Zeitschrift. 2, p. 37-40
  Research output: Contribution to journal › Article › peer-review
• PublishedIndirect Redox Transformations of Iron, Copper, and Chromium Catalyzed by Extremely Acidophilic Bacteria
  Johnson, D. B., Hedrich, S. & Pakostova, E., Feb 2017, In: Frontiers in Microbiology. 8, 211.
  Research output: Contribution to journal › Article › peer-review
• PublishedIndirect oxidative bioleaching of a polymetallic black schist sulfide ore
  Pakostova, E., Grail, B. & Johnson, D., 15 May 2017, In: Minerals Engineering. 106, p. 102-107
  Research output: Contribution to journal › Article › peer-review
• PublishedMolecular systematics of the genus Acidithiobacillus: insights into the phylogenetic structure and diversification of the taxon
  Nuñez, H., Moya-Beltrán, A., Covarrubias, P. C., Issotta, F., Cárdenas, J. P., González, M., Atavales, J., Acuña, L. G., Johnson, D. B. & Quatrini, R., 19 Jan 2017, In: Frontiers in Microbiology. 8, 30.
  Research output: Contribution to journal › Article › peer-review
• PublishedNew approaches for extracting and recovering metals from mine tailings
  Falagan Rodriguez, M. D. C., Grail, B. & Johnson, D., 15 May 2017, In: Minerals Engineering. 106, p. 71-78
  Research output: Contribution to journal › Article › peer-review
• PublishedNovel approaches for the selective capture of transition metals from mine waters using low pH sulfur- and sulfate-reducing bioreactors
  Holanda, R., Santos, A. & Johnson, D. B., 2 Apr 2017, In: Abstracts of papers - American Chemical Society. 253
  Research output: Contribution to journal › Meeting Abstract › peer-review
• PublishedRecent Advances in Acidophile Microbiology: Fundamentals and Applications
  Johnson, D. B. (Editor) & Schippers, A. (Editor), 19 Jan 2017, Frontiers Media. 155 p.
  Research output: Book/Report › Book
• PublishedRecent Advances in Acidophile Microbiology: Fundamentals and Applications
  Johnson, D. B. (Editor) & Schippers, A. (Editor), 14 Mar 2017, Frontiers Media.
  Research output: Book/Report › Book › peer-review
• PublishedReductive Dissolution of a Lateritic Ore Containing Rare Earth Elements (REE) Using Acidithiobacillus Species
  Nancucheo, I., Johnson, D. B., Lopes, M. & Oliveira, G., Aug 2017, In: Solid State Phenomena. 262, p. 299-302
  Research output: Contribution to journal › Article › peer-review
• PublishedReductive bioprocessing of cobalt-bearing limonitic laterites
  Smith, S., Grail, B. & Johnson, D., 15 May 2017, In: Minerals Engineering. 106, p. 86-90
  Research output: Contribution to journal › Article › peer-review
• PublishedSelective Chemical and Biological Metal Recovery from Cu-Rich Bioleaching Solutions
  Hedrich, S., Kermer, R., Aubel, T., Martin, M., Schippers, A., Johnson, D. B. & Janneck, E., Aug 2017, In: Solid State Phenomena. 262, p. 107-112
  Research output: Contribution to journal › Article › peer-review
• PublishedThe BIOMOre Project – A New Mining Concept for Extracting Metals from Deep Ore Deposits Using Biotechnology
  Fillipov, L., Izart, C., Hejny, H., Hirsch, K., Johnson, B., Kahnt, R., Marten, H. & Slabbert, W., Oct 2017, In: Mining Report. 153, 5, p. 436-445
  Research output: Contribution to journal › Article › peer-review
• PublishedThe Use of Algal Biomass to Sustain Sulfidogenic Bioreactors for Remediating Acidic Metal-Rich Waste Waters
  Santos, A. L. & Johnson, D. B., 2017, In: Solid State Phenomena. 262, p. 577-581
  Research output: Contribution to journal › Article › peer-review
• PublishedThe effects of temperature and pH on the kinetics of an acidophilic sulfidogenic bioreactor and indigenous microbial communities
  Santos, A. L. & Johnson, D. B., Mar 2017, In: Hydrometallurgy. 168, p. 116-120
  Research output: Contribution to journal › Article › peer-review

2016

• PublishedA case in support of implementing innovative bio-processes in the metal mining industry
  Sanchez-Andrea, I., Stams, A. J. M., Weijma, J., Gonzalez Contreras, P., Dijkman, H., Rozendal, R. A. & Johnson, D., 18 Apr 2016, In: FEMS Microbiology Letters. 363, 11, fnw106.
  Research output: Contribution to journal › Article › peer-review
• PublishedAcidithiobacillus ferriphilus sp. nov.: a facultatively anaerobic iron- and sulfur-metabolising extreme acidophile
  Falagan, C. & Johnson, D. B., 1 Jan 2016, In: International Journal of Systematic and Evolutionary Microbiology. 66, 1, p. 206-211
  Research output: Contribution to journal › Article › peer-review
• PublishedAcidophile microbiology in space and time
  Johnson, D. B. & Quatrini, R., 2016, Acidophiles: Life in Extremely Acidic Environments. Johnson, D. B. & Quatrini, R. (eds.). Caister Academic Press Limited, p. 3-16
  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
• PublishedAcidophiles: Life in Extremely Acidic Environments
  Quatrini, R. (Editor) & Johnson, B., 2016, Caister Academic Press Limited. 324 p.
  Research output: Book/Report › Book › peer-review
• PublishedBIOMOre – An alternative mining concept
  Pakostova, E. & Johnson, D. B., Jun 2016.
  Research output: Contribution to conference › Poster › peer-review
• PublishedBiobasierte In-situ-Gewinnung von Industriemetallen aus unzugänglichen Lägerstatten zur EU-Rohstoffsicherung
  Matthies, R., Hejny, H., Hirsch, K., Kahnt, R., Marten, H. & Johnson, D., 12 Sept 2016, In: Georesources Zeitschrift. p. 34-38
  Research output: Contribution to journal › Article › peer-review
• PublishedBiologically-induced precipitation of aluminium in synthetic acid mine water
  Falagan Rodriguez, C., Johnson, D. B., Sanchez-Espana, J. & Yusta, I., Jun 2016, Biohydromet 2016 Proceedings.
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedDetection, identification and typing of Acidithiobacillus species and strains: a review
  Nuñez, H., Covarrubias, P. C., Moya-Beltrán, A., Issotta, F., Atavales, J., Acuña, L. G., Johnson, D. B. & Quatrini, R., Sept 2016, In: Research in Microbiology. 167, 7, p. 555-567
  Research output: Contribution to journal › Article › peer-review
• PublishedDeveloping Sustainable Biotechnologies for Mine Water Treatment in the 21st Century
  Johnson, B., Santos, A. L., Falagan, C., Jones, R. M., Grail, B. M., Holanda, R. & Hedrich, S., Jul 2016, Procddings IMWA 2016. p. 782-789
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedDraft Genome Sequence of a Novel Acidophilic Iron-Oxidizing Firmicutes Species, “Acidibacillus ferrooxidans” (SLC66T)
  Nancucheo, I., Oliveira, R., Dall’Agnol, H., Johnson, D. B., Holanda, R., Lopes Nunes, G., Cuadros-Orellana, S. & Oliveira, G., May 2016, In: Genome Announcements. 4, 3, e00383-16.
  Research output: Contribution to journal › Article › peer-review
• PublishedDraft Genome Sequence of “Acidibacillus ferrooxidans” ITV01, a Novel Acidophilic Firmicute Isolated from a Chalcopyrite Mine Drainage Site in Brazil
  Dall’Agnol, H., Nancucheo, I., Johnson, D. B., Oliveira, R., Leite, L., Pylro, V. S., Holanda, R., Grail, B., Carvalho, N., Lopes Nunes, G., Tzotzos, G., Rocha Fernandes, G., Dutra, J., Cuadros-Orellana, S. & Oliveira, G., Mar 2016, In: Genome Announcements. 4, 2, e01748-15.
  Research output: Contribution to journal › Article › peer-review
• PublishedIn situ bioleaching: an alternative approach of metal extraction from deep-buried sulfide ores
  Pakostova, E., Grail, B. & Johnson, D. B., Jun 2016, Biohydromet 2016 Proceedings.
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedIron Kinetics and Evolution of Microbial Populations in Low-pH, Ferrous Iron-Oxidizing Bioreactors
  Jones, R. M. & Johnson, D. B., 2 Aug 2016, In: Environmental Science and Technology. 50, 15, p. 8239-45 7 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedIron-mineral accretion from acid mine drainage and its application in passive treatment
  Florence, K., Sapsford, D. J., Johnson, D. B., Kay, C. & Wolkersdorfer, C., 2016, In: Environmental Technology. 37, 11, p. 1428-1440
  Research output: Contribution to journal › Article › peer-review
• PublishedIsolation and characterisation of mineral-oxidizing “Acidibacillus” spp. from mine sites and geothermal environments in different global locations
  Holanda, R., Hedrich, S., Nancucheo, I., Oliveira, G., Grail, B. & Johnson, D., Sept 2016, In: Research in Microbiology. 167, 7, p. 613-623
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobial communities and interactions in low pH environments
  Johnson, D. B., 2016, Acidophiles: Life in Extremely Acidic Environments. Quatrini, R. & Johnson, D. B. (eds.). Caister Academic Press Limited, p. 121-138
  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
• PublishedMicrobial communities in passive remediation systems at three abandoned coal mine sites in the United Kingdom
  Falagan Rodriguez, C., Smail, I., Grail, B. & Johnson, D. B., Jul 2016, Proceedings IMWA 2016 . p. 796-803
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedNew approaches for recovering metals from mine wastes
  Falagan Rodriguez, C., Grail, B. & Johnson, D. B., Jun 2016, Biohydromet 2016 Proceedings.
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedNew insights into the microbiology of meromictic acidic pit lakes in the Iberian Pyrite Belt (Spain)
  Falagan Rodriguez, C., Sanchez-Espana, J., Yusta, I. & Johnson, D. B., Jul 2016, Proceedings IMWA 2016. p. 192-198
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedOxidative and reductive bioprocessing of cobalt bearing ores, and recovery of cobalt minerals via biosulfidogenesis
  Smith, S., Grail, B. & Johnson, D. B., Jun 2016, Biohydromet 2016 Proceedings.
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedRemediation of acidic metal-rich waste waters using sulfidogenic bioreactor sustained by algal biomass
  Santos, A. L. & Johnson, D. B., Jun 2016, Biohydromet 2016 Proceedings.
  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
• PublishedSolid and liquid media for isolating and cultivating acidophilic and acid-tolerant sulfate-reducing bacteria
  Nancucheo, I., Rowe, O. F., Hedrich, S. & Johnson, D., 1 May 2016, In: FEMS Microbiology Letters. 363, p. fnw083
  Research output: Contribution to journal › Article › peer-review
• PublishedThe Microbiology of Extremely Acidic Environment
  Johnson, D. B. & Aguilera, A., May 2016, Manual of Environmental Microbiology. Yates, M. V., Nakatsu, C. H., Miller, R. V. & Pillai, S. D. (eds.). 4th ed.
  Research output: Chapter in Book/Report/Conference proceeding › Chapter

2015

• PublishedAcidithrix ferrooxidans gen. nov., sp. nov.; a filamentous and obligately heterotrophic, acidophilic member of the Actinobacteria that catalyzes dissimilatory oxido-reduction of iron
  Jones, R. M. & Johnson, D. B., 29 Jan 2015, In: Research in Microbiology. 166, 2, p. 111-120
  Research output: Contribution to journal › Article › peer-review
• PublishedBiomining goes underground
  Johnson, D. B., 27 Feb 2015, In: Nature Geoscience. 8, p. 165-166
  Research output: Contribution to journal › Article › peer-review
• PublishedBiomining in reverse gear: using bacteria to extract metals from oxidized ores
  Johnson, D. B. & du Plessis, C. A., 1 May 2015, In: Minerals Engineering. 75, 1, p. 2-5
  Research output: Contribution to journal › Article › peer-review
• PublishedBiosynthesis of Zinc Sulfide Quantum Dots Using Waste Off-Gas from Metal Bioremediation Process
  Roussel, J., Murray, A. J., Rolley, J., Johnson, D. B. & Macaskie, L. E., Nov 2015, In: Advanced Materials Research. 1130, p. 555-559
  Research output: Contribution to journal › Article › peer-review
• PublishedCharacteristics of Acidibacillus Spp.: A Novel Genus of Acidophilic Iron-Oxidising Firmicutes
  Barata Holanda, R., Hedrich, S., Falagan Rodriguez, C., Nancucheo, I., Dall’Agnol, H., Grail, B. & Johnson, D. B., Nov 2015, In: Advanced Materials Research. 1130, p. 36-39
  Research output: Contribution to journal › Article › peer-review
• PublishedCombined Recovery of Copper and Mitigation of Pollution Potential of a Synthetic Metal-Rich Stream Draining a Copper Mine in Brazil
  Santos, A. L. & Johnson, B., 1 Nov 2015, In: Advanced Materials Research. p. 606-609
  Research output: Contribution to journal › Article › peer-review
• PublishedDesulfosporosinus acididurans sp nov.: an acidophilic sulfate-reducing bacterium isolated from acidic sediments
  Sanchez-Andrea, I., Stams, A. J., Hedrich, S., Nancucheo, I. & Johnson, D. B., Jan 2015, In: Extremophiles. 19, 1, p. 39-47
  Research output: Contribution to journal › Article › peer-review
• PublishedDevelopment and application of acidophilic sulfidogenic bioreactors for combined pH amelioration, sulfate removal and selective recovery of metals from acidic waste-waters
  Santos, A. L., Barata Holanda, R., Hedrich, S., Nancucheo, I., Falagan Rodriguez, C., Grail, B. & Johnson, D. B., 2015.
  Research output: Contribution to conference › Paper › peer-review
• PublishedDevelopment of a Strategy for Selective Metal Recovery from Pregnant Leach Solutions of Kupferschiefer Bioleaching
  Hedrich, S., Schippers, A. & Johnson, D. B., Nov 2015, In: Advanced Materials Research. 1130, p. 255-258
  Research output: Contribution to journal › Article › peer-review
• PublishedDiversity of acidophilic prokaryotes at two acid mine drainage sites in Turkey
  Aytar, P., Kay, C. M., Mutlu, M. B., Cabuk, A. & Johnson, D. B., Apr 2015, In: Environmental Science and Pollution Research. 22, 8, p. 5995-6003
  Research output: Contribution to journal › Article › peer-review
• PublishedExtraction of copper from an oxidized (lateritic) ore using bacterially-catalysed reductive dissolution
  Nancucheo, I. P., Ňancucheo, I., Grail, B. M., Hilario, F., du Plessis, C. A. & Johnson, D. B., 1 Apr 2015, In: Applied Microbiology and Biotechnology. 98, 14, p. 6297-6305
  Research output: Contribution to journal › Article › peer-review
• PublishedGenome Sequence of the Acidophilic Ferrous Iron-Oxidizing Isolate Acidithrix ferrooxidans Strain Py-F3, the Proposed Type Strain of the Novel Actinobacterial Genus Acidithrix
  Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2
  Research output: Contribution to journal › Article › peer-review
• PublishedGenome Sequence of the Acidophilic Iron Oxidizer Ferrimicrobium acidiphilum Strain T23T
  Eisen, S., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 30 Apr 2015, In: Genome Announcements. 3, 2
  Research output: Contribution to journal › Article › peer-review
• PublishedGenome Sequence of the Acidophilic Sulfate-Reducing Peptococcaceae Strain CEB3
  Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4
  Research output: Contribution to journal › Article › peer-review
• PublishedGenome Sequence of the Moderately Acidophilic Sulfate-Reducing Firmicute Desulfosporosinus acididurans (Strain M1T)
  Petzsch, P., Poehlein, A., Johnson, D. B., Daniel, R., Schlömann, M. & Mühling, M., 6 Aug 2015, In: Genome Announcements. 3, 4
  Research output: Contribution to journal › Article › peer-review
• PublishedIndirect bioleaching of sulfidic ores and its importance for the development of in situ processing of deep-buried base metal deposits
  Pakostova, E., Grail, B. & Johnson, D. B., Oct 2015.
  Research output: Contribution to conference › Paper › peer-review
• PublishedMicrobial Communities in Sediments in Acidic, Metal-Rich Mine Lakes: Results from a Study in South-West Spain
  Falagan Rodriguez, C., Sánchez-España, F. J., Yusta, I. & Johnson, D. B., Nov 2015, In: Advanced Materials Research. 1130, p. 7-10
  Research output: Contribution to journal › Article › peer-review
• PublishedNew Insights into Salt-Tolerance in Acidophilic Iron-Oxidising Bacteria
  Johnson, D. B., Grail, B. & Bonnefoy, V., Nov 2015, In: Advanced Materials Research. 1130, p. 3-6
  Research output: Contribution to journal › Article › peer-review
• PublishedOxidative and reductive bioprocessing of cobalt-containing ores and biomineralisation of cobaltiferous leachates
  Smith, S., Grail, B. & Johnson, D. B., Oct 2015.
  Research output: Contribution to conference › Paper › peer-review
• PublishedRedox Transformations of Iron and Other Transition Metals by Acidophilic Bacteria
  Johnson, D. B., Aug 2015.
  Research output: Contribution to conference › Paper › peer-review
• PublishedRedox transformations in sulfur and transition metals at low pH and how these impact metal extraction biotechnologies
  Johnson, D. B., Nov 2015.
  Research output: Contribution to conference › Paper › peer-review

2014

• PublishedAcidibacter ferrireducens gen. nov., sp. nov.: an acidophilic ferric iron-reducing gammaproteobacterium
  Falagan, C. & Johnson, D. B., 13 Aug 2014, In: Extremophiles. 18, 6, p. 1067-1073
  Research output: Contribution to journal › Article › peer-review
• PublishedBiomining - biotechnologies for extracting and recovering metals from ores and waste materials
  Johnson, D. B., 6 May 2014, In: Current Opinion in Biotechnology. 30, p. 24-31
  Research output: Contribution to journal › Article › peer-review
• PublishedDraft Genome Sequence of the Nominated Type Strain of “Ferrovum myxofaciens,” an Acidophilic, Iron-Oxidizing Betaproteobacterium
  Moya-Beltran, A., Cardenas, J. P., Covarrubias, P. C., Issotta, F., Ossandon, F. J., Grail, B. M., Holmes, D. S., Quatrini, R. & Johnson, D. B., 21 Aug 2014, In: Genome Announcements. 2, 4
  Research output: Contribution to journal › Article › peer-review
• PublishedInsights into the pathways of iron- and sulfur-oxidation, and biofilm formation from the chemolithotrophic acidophile Acidithiobacillus ferrivorans CF27
  Talla, E., Hedrich, S., Mangenot, S., Ji, B. Y., Johnson, D. B., Barbe, V. & Bonnefoy, V., 19 Aug 2014, In: Research in Microbiology. 165, 9, p. 753-760
  Research output: Contribution to journal › Article › peer-review
• PublishedInvestigation of the microbial diversity of an extremely acidic, metal-rich water body (Lake Robule, Bor, Serbia)
  Johnson, D. B., Stanković, S., Morić, I., Pavić, A., Vasiljević, B., Johnson, B. D. & Cvetković, V., 30 Jan 2014, In: Journal of the Serbian Chemical Society. 79, 6, p. 729-741
  Research output: Contribution to journal › Article › peer-review
• PublishedMicroorganisms in subterranean acidic waters within Europe's deepest metal mine
  Kay, C. M., Haanela, A. & Johnson, D. B., 22 Jul 2014, In: Research in Microbiology. 165, 9, p. 705-712
  Research output: Contribution to journal › Article › peer-review
• PublishedMulti Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation
  Nuñez, H., Loyola, D., Cárdenas, J. P., Holmes, D. S., Johnson, D. & Quantrini, R., Nov 2014, In: Research in Microbiology. 165, 9, p. 735-742
  Research output: Contribution to journal › Article › peer-review
• PublishedNew insights into the biogeochemistry of extremely acidic environments revealed by a combined cultivation-based and culture-independent study of two stratified pit lakes
  Falagan, C., Sánchez-España, J. & Johnson, D. B., 1 Jan 2014, In: Fems Microbiology Ecology. 87, 1, p. 231-243
  Research output: Contribution to journal › Article › peer-review
• PublishedRecent Developments in Microbiological Approaches for Securing Mine Wastes and for Recovering Metals from Mine Waters
  Johnson, D. B., 14 Apr 2014, In: Minerals. 4, 2, p. 279-292
  Research output: Contribution to journal › Article › peer-review
• PublishedRemediation and selective recovery of metals from acidic mine waters using novel modular bioreactors
  Hedrich, S. & Johnson, D. B., 24 Sept 2014, In: Environmental Science and Technology. 48, 20, p. 12206–12212
  Research output: Contribution to journal › Article › peer-review
• PublishedRemoval of sulfate from extremely acidic mine waters using low pH sulfidogenic bioreactors
  Nancucheo, I. & Johnson, D. B., 1 Dec 2014, In: Hydrometallurgy. 150, p. 222-226
  Research output: Contribution to journal › Article › peer-review
• PublishedUncovering a microbial enigma: isolation and characterization of the streamer-generating, iron-oxidizing acidophilic bacteriam, "Ferrovum myxofaciens"
  Johnson, D. B., Hallberg, K. B., Hedrich, S. & Hedrich, S. (Editor), Jan 2014, In: Applied and Environmental Microbiology. 80, 2, p. 672-680
  Research output: Contribution to journal › Article › peer-review

2013

• PublishedA New Direction for Biomining: Extraction of Metals by Reductive Dissolution of Oxidized Ores
  Johnson, D. B., Grail, B. M. & Hallberg, K. B., 30 Jan 2013, In: Minerals. 3, 1, p. 49-58
  Research output: Contribution to journal › Article › peer-review
• PublishedAcidithiobacillus ferridurans, sp. nov.; an acidophilic iron- , sulfur- and hydrogen-metabolizing chemolithotrophic Gammaproteobacterium
  Hedrich, S. & Johnson, D. B., 24 May 2013, In: International Journal of Systematic Evolutionary Microbiology.
  Research output: Contribution to journal › Article › peer-review
• PublishedAcidocella aromatica sp. nov.: an acidophilic heterotrophic alphaproteobacterium with unusual phenotypic traits
  Jones, R. M., Hedrich, S. & Johnson, D. B., 1 Sept 2013, In: Extremophiles. 17, 5, p. 841-850
  Research output: Contribution to journal › Article › peer-review
• PublishedAerobic and anaerobic oxidation of hydrogen by acidophilic bacteria
  Hedrich, S. & Johnson, D. B., 1 Dec 2013, In: FEMS Microbiology Letters. 349, 1, p. 40-45
  Research output: Contribution to journal › Article › peer-review
• PublishedAnaerobic Sulfur Metabolism Coupled to Dissimilatory Iron Reduction in the Extremophile Acidithiobacillus ferrooxidans
  Osorio, H., Mangold, S., Denis, Y., Ñancucheo, I., Esparza, M., Johnson, D. B., Bonnefoy, V., Dopson, M. & Holmes, D. S., 1 Apr 2013, In: Applied and Environmental Microbiology. 79, 7, p. 2172-2181
  Research output: Contribution to journal › Article › peer-review
• PublishedDevelopment and application of biotechnologies in the metal mining industry
  Johnson, D. B., 1 Nov 2013, In: Environmental Science and Pollution Research. 20, 11, p. 7768-7776
  Research output: Contribution to journal › Article › peer-review
• PublishedEvidence for Widespread Dissimilatory Hydrogen Metabolism among Acidophilic Bacteria
  Hedrich, S. & Johnson, D. B., 1 Oct 2013, In: Advanced Materials Research. 825, p. 202-205
  Research output: Contribution to journal › Article › peer-review
• PublishedEvolution of Microbial “Streamer” Growths in an Acidic, Metal-Contaminated Stream Draining an Abandoned Underground Copper Mine
  Kay, C. M., Rowe, O. F., Rocchetti, L., Coupland, K., Hallberg, K. B. & Johnson, D. B., 7 Feb 2013, In: Life. 3, 1, p. 189-210
  Research output: Contribution to journal › Article › peer-review
• PublishedGenome Analysis of the Psychrotolerant Acidophile Acidithiobacillus ferrivorans CF27
  Talla, E., Hedrich, S., Ji, B. Y., Johnson, D. B. & Bonnefoy, V., 1 Oct 2013, In: Advanced Materials Research. 825, p. 145-148
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobial Diversity in Acidic Anaerobic Sediments at the Geothermal Caviahue-Copahue System, Argentina
  Willis, G., Hedrich, S., Ñancucheo, I., Johnson, D. B. & Donati, E. R., 1 Oct 2013, In: Advanced Materials Research. 825, p. 7-10
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobiological Communities in Two Acidic Mine Pit Lakes in the Iberian Pyrite Belt (IPB), Spain
  Falagan, C., Sánchez-España, F. J. & Johnson, D. B., 1 Oct 2013, In: Advanced Materials Research. 825, p. 19-22
  Research output: Contribution to journal › Article › peer-review
• PublishedReduction and Complexation of Copper in a Novel Bioreduction System Developed to Recover Base Metals from Mine Process Waters
  Hedrich, S., du Plessis, C. A., Mora, N. & Johnson, D. B., 1 Oct 2013, In: Advanced Materials Research. 825, p. 483-486
  Research output: Contribution to journal › Article › peer-review
• PublishedResource recovery from waste waters: Using Biomineralisation for the selective recovery of metals from acid
  Johnson, D. B., 15 Aug 2013.
  Research output: Contribution to conference › Paper
• PublishedSelective Metal Removal from Scandinavian Mine Waters Using Novel Biomineralization Technologies
  Kay, C. M., Hedrich, S. & Johnson, D. B., 1 Oct 2013, In: Advanced Materials Research. 825, p. 479-482
  Research output: Contribution to journal › Article › peer-review
• PublishedSulfate Removal from Extremely Acidic Wastewaters Using Consortia of Acidophilic Sulfate-Reducing Bacteria
  Ñancucheo, I. & Johnson, D. B., 1 Oct 2013, In: Advanced Materials Research. 825, p. 487-490
  Research output: Contribution to journal › Article › peer-review
• PublishedThe geochemistry of acid mine drainage
  Blowes, D. W., Ptacek, C. J., Jamboor, J. L., Weisner, C. G., Paktunc, D., Gould, W. D. & Johnson, D., 8 Nov 2013, Treatise on Geochemistry . Holland, H. D. & Turekian, K. K. (eds.). 2nd ed. Elsevier Science, Vol. 11. p. 131-190
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedUsing bacteria to break and make minerals in acidic liquours: industrial and environmental implications
  Johnson, D. B., 19 Jun 2013.
  Research output: Contribution to conference › Paper

2012

• PublishedA modular continuous flow reactor system for the selective bio-oxidation of iron and precipitation of schwertmannite from mine-impacted waters
  Hedrich, S. & Johnson, D. B., 1 Feb 2012, In: Bioresource Technology. 106, p. 44-49
  Research output: Contribution to journal › Article › peer-review
• PublishedAcidophilic algae isolated from mine-impacted environments and their roles in sustaining heterotrophic acidophiles
  Ňancucheo, I. & Johnson, D. B., 11 Sept 2012, In: Fontiers in Microbiology. 3, p. 325
  Research output: Contribution to journal › Article › peer-review
• PublishedBiomining: an Established and Dynamic Biotechnology
  Johnson, D. B., 1 Dec 2012, In: Microbiology Indonesia. 6, 4, p. 189-193
  Research output: Contribution to journal › Article › peer-review
• PublishedDevelopment and application of bioprocessing technologies in the metal mining industry
  Johnson, D. B., 1 Aug 2012.
  Research output: Contribution to conference › Paper
• PublishedEffects of prokaryotic diversity changes on hydrocarbon degradation rates and metal partitioning during bioremediation of contaminated anoxic marine sediments
  Rocchetti, L., Beolchini, F., Hallberg, K. B., Johnson, D. B. & Dell'Anno, A., 1 Aug 2012, In: Marine Pollution Bulletin. 64, 8, p. 1688-1698
  Research output: Contribution to journal › Article › peer-review
• PublishedElucidation of carbon transfer in a mixed culture of Acidiphilium cryptum and Acidithiobacillus ferrooxidans using protein-based stable isotope probing
  Kremer, R., Hedrich, S., Taubert, M., Baumann, S., Schlömann, M., Johnson, D. B. & Seifert, J., 1 May 2012, In: Journal of Integreated OMICS. 2, 1, p. 37-45
  Research output: Contribution to journal › Article › peer-review
• PublishedGeomicrobiology of extremely acidic subsurface environments
  Johnson, D. B., 1 Jul 2012, In: Fems Microbiology Ecology. 81, 1, p. 2-12
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobially-mediated dissolution and synthesis of minerals in extremely acidic environments
  Johnson, D. B., 20 Apr 2012.
  Research output: Contribution to conference › Paper
• PublishedNew microbiological strategies that enable the selective recovery and recycling of metals from acid mine drainage and mine process waters
  Ňancucheo, I., Hedrich, S. & Johnson, D. B., 1 Nov 2012, In: Mineralogical Magazine. 76, 7, p. 2683-2692
  Research output: Contribution to journal › Article › peer-review
• PublishedOn the ecology and physiology of acidophilic sulfate-reducing and iron-oxidizing bacteria
  Johnson, D. B., 1 Oct 2012.
  Research output: Contribution to conference › Paper
• PublishedRedox transformations of iron at extremely low pH: fundamental and applied aspects
  Johnson, D. B., Kanao, T. & Hedrich, S., 16 Mar 2012, In: Frontiers in Microbiology. 3, p. 96
  Research output: Contribution to journal › Article › peer-review
• PublishedReductive dissolution of minerals and selective recovery of metals using acidophilic iron- and sulfate-reducing acidophiles
  Johnson, D. B., 1 Oct 2012, In: Hydrometallurgy. 127-128, p. 172-177
  Research output: Contribution to journal › Article › peer-review
• PublishedSelective recovery of metals from Maurliden (Sweden) mine water using novel biomineralization technologies
  Hedrich, S. & Johnson, D. B., 19 Jun 2012.
  Research output: Contribution to conference › Paper
• PublishedSelective removal of transition metals from acidic mine waters by novel consortia of acidophilic sulfidogenic bacteria
  Ňancucheo, I. & Johnson, D. B., 1 Jan 2012, In: Microbial Biotechnology. 5, 1, p. 34-44
  Research output: Contribution to journal › Article › peer-review
• PublishedYou have free access to this content Biodiversity, metabolism and applications of acidophilic sulfur-metabolizing microorganisms
  Dopson, M. & Johnson, D. B., 1 Oct 2012, In: Environmental Microbiology. 14, 10, p. 2620-2631
  Research output: Contribution to journal › Article › peer-review

2011

• PublishedAcidiferrobacter thiooxydans, gen. nov. sp. nov.; an acidophilic, thermo-tolerant, facultatively anaerobic iron- and sulfur-oxidizer of the family Ectothiorhodospiraceae
  Hallberg, K. B., Hedrich, S. & Johnson, D. B., 11 Feb 2011, In: Extremophiles. 15, 2, p. 271-9 9 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedBiodiversity and geochemistry of an extremely acidic, low-temperature subterranean environment sustained by chemolithotrophy.
  Kimura, S., Bryan, C. G., Hallberg, K. B. & Johnson, D. B., 1 Aug 2011, In: Environmental Microbiology. 13, 8, p. 2092-2104
  Research output: Contribution to journal › Article › peer-review
• PublishedCharacteristics of a phylogenetically ambiguous, arsenic-oxidizing Thiomonas sp., Thiomonas arsenitoxydans strain 3As(T) sp. nov
  Slyemi, D., Moinier, D., Brochier-Armanet, C., Bonnefoy, V. & Johnson, D. B., 16 Mar 2011, In: Archives of Microbiology. 193, 6, p. 439-49 11 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedFerredox: A biohydrometallurgical processing concept for limonitic nickel laterites
  du Plessis, C. A., Slabbert, W., Hallberg, K. B. & Johnson, D. B., 1 Oct 2011, In: Hydrometallurgy. 109, 3-4, p. 221-229
  Research output: Contribution to journal › Article › peer-review
• PublishedSignificance of Microbial Communities and Interactions in Safeguarding Reactive Mine Tailings by Ecological Engineering
  Ňancucheo, I. & Johnson, D. B., 1 Dec 2011, In: Applied and Environmental Microbiology. 77, 23, p. 8201-8208
  Research output: Contribution to journal › Article › peer-review
• PublishedThe iron-oxidizing proteobacteria
  Hedrich, S., Schlömann, M. & Johnson, D. B., Jun 2011, In: Microbiology - SGM. 157, Pt 6, p. 1551-1564 14 p.
  Research output: Contribution to journal › Review article › peer-review

2010

• PublishedAcidithiobacillus ferrivorans, sp nov.; facultatively anaerobic, psychrotolerant iron-, and sulfur-oxidizing acidophiles isolated from metal mine-impacted environments.
  Hallberg, K. B., Gonzalez-Toril, E. & Johnson, D. B., 1 Oct 2010, In: Extremophiles. 14, 1, p. 9-19
  Research output: Contribution to journal › Article › peer-review
• PublishedProduction of Glycolic Acid by Chemolithotrophic Iron- and Sulfur-Oxidizing Bacteria and Its Role in Delineating and Sustaining Acidophilic Sulfide Mineral-Oxidizing Consortia.
  Nancucheo, I. & Johnson, D. B., 1 Jan 2010, In: Applied and Environmental Microbiology. 76, 2, p. 461-467
  Research output: Contribution to journal › Article › peer-review
• PublishedSulfidogenesis and selective precipitation of metals at low pH mediated by Acidithiobacillus spp. and acidophilic sulfate-reducing bacteria
  Jameson, E., Rowe, O. F., Hallberg, K. B. & Johnson, D. B., 1 Oct 2010, In: Hydrometallurgy. 104, 3-4, p. 488-493
  Research output: Contribution to journal › Article › peer-review

2009

• PublishedCarbon, Iron and Sulfur Metabolism in Acidophilic Micro-Organisms.
  Johnson, D. B. & Hallberg, K. B., 1 Jan 2009, In: Advances in Microbial Physiology. 54, p. 201-255
  Research output: Contribution to journal › Article › peer-review
• PublishedFerrimicrobium acidiphilum gen. nov., sp nov and Ferrithrix thermotolerans gen. nov., sp nov.: heterotrophic, iron-oxidizing, extremely acidophilic actinobacteria.
  Johnson, D. B., Bacelar-Nicolau, P., Okibe, N., Thomas, A. & Hallberg, K. B., 1 May 2009, In: International Journal of Systematic and Evolutionary Microbiology. 59, p. 1082-1089
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobial diversity and genetic response to stress conditions of extremophilic bacteria isolated from the Escondida copper mine.
  Galleguillos, P. A., Hallberg, K. B., Johnson, D. B., Donati, E. R. (Editor), Viera, M. R. (Editor), Tavani, E. L. (Editor), Giaveno, M. A. (Editor), Lavalle, T. L. (Editor) & Chiacchiarini, P. A. (Editor), 1 Jan 2009, p. 55-58.
  Research output: Contribution to conference › Paper
• PublishedPhysiological and phylogenetic heterogeneity among iron-oxidizing Acidithiobacillus spp., and characteristics of the novel species Acidithiobacillus ferrivorans.
  Hallberg, K. B., Amouric, A., Brochier-Armanet, C., Bonnefoy, V., Johnson, D. B., Donati, E. R. (Editor), Viera, M. R. (Editor), Tavani, E. L. (Editor), Giaveno, M. A. (Editor), Lavalle, T. L. (Editor) & Chiacchiarini, P. A. (Editor), 1 Jan 2009, p. 167-170.
  Research output: Contribution to conference › Paper
• PublishedSulfidogenesis at low pH by acidophilic bacteria and its potential for the selective recovery of transition metals from mine waters
  Johnson, D. B., Jameson, E., Rowe, O. F., Wakeman, K. & Hallberg, K. B., 24 Sept 2009, Biohydrometallurgy: a meeting point between microbial ecology,metal recovery processes and environmental remediation. Trans Tech Publications, Vol. 71-73. p. 693-696 (Advanced Materials Research).
  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
• PublishedSulfidogenesis at low pH by acidophilic bacteria and its potential for the selective recovery of transition metals from mine waters.
  Johnson, D. B., Jameson, E., Rowe, O. F., Wakeman, K. & Hallberg, K. B., 1 Jan 2009, p. 693-696.
  Research output: Contribution to conference › Paper

2008

• Published"Bioshrouding": a novel approach for securing reactive mineral tailings
  Johnson, D. B., Yajie, L. & Okibe, N., Mar 2008, In: Biotechnology Letters. 30, 3, p. 445-9 5 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedBiodiversity and interactions of acidophiles: Key to understanding and optimizing microbial processing of ores and concentrates.
  Johnson, D. B., 1 Dec 2008, In: Transactions of Nonferrous Metals Society of China. 18, 6, p. 1367-1373
  Research output: Contribution to journal › Article › peer-review
• PublishedCharacterisation of an attenuation system for the remediation of Mn(II) contaminated waters.
  Mariner, R., Johnson, D. B. & Hallberg, K. B., 1 Nov 2008, In: Hydrometallurgy. 94, 1-4, p. 100-104
  Research output: Contribution to journal › Article › peer-review
• PublishedComparison of ferric iron generation by different species of acidophilic bacteria immobilized in packed-bed reactors.
  Rowe, O. F. & Johnson, D. B., 1 Mar 2008, In: Systematic and Applied Microbiology. 31, 1, p. 68-77
  Research output: Contribution to journal › Article › peer-review
• PublishedEvidence that the potential for dissimilatory ferric iron reduction is widespread among acidophilic heterotrophic bacteria.
  Coupland, K. & Johnson, D. B., 1 Feb 2008, In: FEMS Microbiology Letters. 279, 1, p. 30-35
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobiological and Geochemical Dynamics in Simulated-Heap Leaching of a Polymetallic Sulfide Ore.
  Wakeman, K., Auvinen, H. & Johnson, D. B., 1 Nov 2008, In: Biotechnology and Bioengineering. 101, 4, p. 739-750
  Research output: Contribution to journal › Article › peer-review
• PublishedPerformance and key biogeochemical reactions in full-scale passive mine water treatment systems.
  Aplin, A. C., Fabian, D., Morrison, M. I., Younger, P. L., Hallberg, K. & Johnson, D. B., 1 Jul 2008, In: Geochimica et Cosmochimica Acta. 72, 12, p. A30
  Research output: Contribution to journal › Article › peer-review
• PublishedSulfobacillus benefaciens sp nov., an acidophilic facultative anaerobic Firmicute isolated from mineral bioleaching operations.
  Johnson, D. B., Joulian, C., d'Hughes, P. & Hallberg, K. B., 1 Nov 2008, In: Extremophiles. 12, 6, p. 789-798
  Research output: Contribution to journal › Article › peer-review

2007

• PublishedAttachment of acidophilic bacteria to solid surfaces: The significance of species and strain variations.
  Ghauri, M. A., Okibe, N. & Johnson, D. B., 1 Mar 2007, In: Hydrometallurgy. 85, 2-4, p. 72-80
  Research output: Contribution to journal › Article › peer-review
• PublishedCharacterization of new iron oxidizing bacteria from an acid mine water treatment plant
  Hedrich, S., Heinzel, E., Seifert, J., Hallberg, K. B., Johnson, D. B. & Schlomann, M., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 582
  Research output: Contribution to journal › Article › peer-review
• PublishedComparison of microbiological populations of mineral heaps and mine wastes of different ages in active and abandoned copper mines
  Bryan, C. G., Hallberg, K. B. & Johnson, D. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 585
  Research output: Contribution to journal › Article › peer-review
• PublishedConcentrate mineralogy dictates the composition of bioleaching mineral consortia
  Johnson, D. B., Yajie, L., Okibe, N., Coupland, K. & Hallberg, K. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 403-404
  Research output: Contribution to journal › Article › peer-review
• PublishedDevelopment of a novel biological system for removing manganese from contaminated waters
  Mariner, R., Johnson, D. B. & Hallberg, K. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 267-270
  Research output: Contribution to journal › Article › peer-review
• PublishedEffect of temperature on bioleaching of copper concentrates containing high concentrations of silver: opposite rules apply
  Hallberg, K. B., Yajie, L., Okibe, N. & Johnson, D. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 168-169
  Research output: Contribution to journal › Article › peer-review
• PublishedIron and carbon metabolism by a mineral-oxidizing Alicyclobacillus-like bacterium
  Yahya, A., Hallberg, K. B. & Johnson, D. B., 15 Nov 2007, In: Archives of Microbiology. 189, 4, p. 305-12 8 p.
  Research output: Contribution to journal › Article › peer-review
• PublishedIsolation, enumeration, growth, and preservation of acidophilic prokaryotes.
  Hallberg, K. B., Johnson, D. B., Hurst, C. J. (Editor), Crawford, R. L. (Editor), Garland, J. L. (Editor), Lipson, D. A. (Editor), Mills, A. L. (Editor) & Stetzenbach, L. D. (Editor), 1 Jan 2007, Manual of Environmental Microbiology: 3rd Edition. 2007 ed. American Society for Microbiology, p. 1155-1165
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedMicrobial communities and geochemical dynamics in an extremely acidic, metal-rich stream at an abandoned sulfide mine (Huelva, Spain) underpinned by two functional primary production systems
  Rowe, O. F., Sanchez-Espana, J., Hallberg, K. & Johnson, D. B., 1 Jul 2007, In: Environmental Microbiology. 9, 7, p. 1761-1771
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobial communities in a porphyry copper tailings impoundment and their impact on the geochemical dynamics of the mine waste
  Diaby, N., Dold, B., Pfeifer, H. R., Holliger, C., Johnson, D. B. & Hallberg, K. B., 1 Feb 2007, In: Environmental Microbiology. 9, 2, p. 298-307
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobial poulations in a 110 ton-scale column for the recovery of metals from black schist ores
  Hallberg, K. B., Johnson, D. B., Langwaldt, J. & Joulian, C., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 170
  Research output: Contribution to journal › Article › peer-review
• PublishedPhysiology and ecology of acidophilic microorganisms.
  Johnson, D. B., Gerday, C. (Editor) & Glansdorff, N. (Editor), 1 Jan 2007, Physiology and Biochemistry of Extremophiles. 2007 ed. American Society for Microbiology, p. 257-270
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedTechniques for detecting and identifying acidophilic mineral-oxidising microorganisms.
  Johnson, D. B., Hallberg, K. B., Rawlings, D. E. (Editor) & Johnson, D. B. (Editor), 1 Jan 2007, Biomining. 2007 ed. Springer Verlag, p. 237-262
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedThe Bioshale project: search for a sustainable way of exploiting black shale ores using biotechnology
  d'Hughes, P., Grotowski, A., Luszczkiewicz, A., Sadawski, Z., Farbiszewska, T., Sklodowska, A., Loukola-Riskeeniemi, K., Langwaldt, J., Palma, J., Norris, P., Glombitza, F., Groudev, S., Pasava, J. & Johnson, D. B., 1 Jan 2007, In: Advanced Materials Research. 20-21, p. 42-45
  Research output: Contribution to journal › Article › peer-review
• PublishedThe microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia.
  Rawlings, D. E. & Johnson, D. B., 1 Feb 2007, In: Microbiology - SGM. 153, 2, p. 315-324
  Research output: Contribution to journal › Article › peer-review

2006

• PublishedBiodiversity of microbial populations in macroscopic “acid streamer” growths at an abandoned pyrite mine, as revealed by a combination of cultivation-based and cultivation-independent techniques.
  Johnson, D. B., Kimura, S., Hallberg, K. B., Querellou, J. (Editor) & Lamy, C. (Editor), 1 Jan 2006, p. 139.
  Research output: Contribution to conference › Paper
• PublishedBiohydrometallurgy and the environment: Intimate and important interplay
  Johnson, D. B., 1 Sept 2006, In: Hydrometallurgy. 83, 1-4, p. 153-166
  Research output: Contribution to journal › Article › peer-review
• PublishedBiomining
  Rawlings, D. E. (Editor) & Johnson, D. B. (Editor), 1 Jan 2006, 2006 ed. Springer Verlag.
  Research output: Book/Report › Book
• PublishedDissimilatory reduction of sulfate in extremely acidic environments is carried out by novel sulfidogenic bacteria in syntrophic consortia.
  Johnson, D. B., Rowe, O. F., Hallberg, K. B., Querellou, J. (Editor) & Lamy, C. (Editor), 1 Jan 2006, p. 36.
  Research output: Contribution to conference › Paper
• PublishedIsolation and characterization of Acidicaldus organivorus, gen. nov., sp nov.: a novel sulfur-oxidizing, ferric iron-reducing thermo-acidophilic heterotrophic Proteobacterium.
  Johnson, D. B., Stallwood, B., Kimura, S. & Hallberg, K. B., 1 Apr 2006, In: Archives of Microbiology. 185, 3, p. 212-221
  Research output: Contribution to journal › Article › peer-review
• PublishedMacroscopic 'acid streamer' growths in acidic, metal-rich mine waters in north Wales consist of novel and remarkably simple bacterial communities
  Hallberg, K., Coupland, K., Kimura, S. & Johnson, D. B., 1 Mar 2006, In: Applied and Environmental Microbiology. 72, 3, p. 2022-2030
  Research output: Contribution to journal › Article › peer-review
• PublishedMobilisation of metals in mineral tailings at the abandoned Sao Domingos copper mine (Portugal) by indigenous acidophilic bacteria.
  Bryan, C. G., Hallberg, K. B. & Johnson, D. B., 1 Sept 2006, In: Hydrometallurgy. 83, 1-4, p. 184-194
  Research output: Contribution to journal › Article › peer-review
• PublishedOxidation of arsenite by Thiomonas strains and characterization of Thiomonas arsenivorans sp nov.
  Battaglia-Brunet, F., Joulian, C., Garrido, F., Dictor, M. C., Morin, D., Coupland, K., Johnson, D. B., Hallberg, K. B. & Baranger, P., 1 Jan 2006, In: Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 89, 1, p. 99-108
  Research output: Contribution to journal › Article › peer-review
• PublishedSulfidogenesis in low pH (3.8-4.2) media by a mixed population of acidophilic bacteria
  Kimura, S., Hallberg, K. B. & Johnson, B., 1 Mar 2006, In: Biodegradation. 17, 2, p. 159-167
  Research output: Contribution to journal › Article › peer-review

2005

• PublishedA novel biosulfidogenic system for the selective recovery of metals from acidic leach liquors and waste streams.
  Rowe, O. F., Hallberg, K. B., Kimura, S. & Johnson, D. B., 1 Jan 2005.
  Research output: Contribution to conference › Paper
• PublishedAcid mine drainage remediation options: a review
  Johnson, D. B. & Hallberg, K. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 3-14
  Research output: Contribution to journal › Article › peer-review
• PublishedBiodiversity of microbial populations in macroscopic “acid streamer” growths at an abandoned pyrite mine, elucidated using a combined cultivation-based and cultivation-independent approaches.
  Kimura, S., Hallberg, K. B., Johnson, D. B., Harrison, S. T. (Editor), Rawlings, D. E. (Editor) & Petersen, J. (Editor), 1 Jan 2005, p. 687-696.
  Research output: Contribution to conference › Paper
• PublishedBiogeochemistry of the compost bioreactor components of a composite acid mine drainage passive remediation system.
  Johnson, D. B. & Hallberg, K. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 81-93
  Research output: Contribution to journal › Article › peer-review
• PublishedBiohydrometallurgy and the environment: intimate and important associations.
  Johnson, D. B., Harrison, S. T. (Editor), Rawlings, D. E. (Editor) & Petersen, J. (Editor), 1 Jan 2005, p. liii-lxvii.
  Research output: Contribution to conference › Paper
• PublishedBiological manganese removal from acid mine drainage in constructed wetlands and prototype bioreactors.
  Hallberg, K. B. & Johnson, D. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 115-124
  Research output: Contribution to journal › Article › peer-review
• PublishedDemonstration of sulfide production by mixed populations of bacteria in low pH bioreactors
  Rowe, O. F., Kimura, S., Hallberg, K. B., Johnson, D. B., Harrison, S. T. (Editor), Rawlings, D. E. (Editor) & Petersen, J. (Editor), 1 Jan 2005, The 16th International Biohydrometallurgy Symposium: Book of Abstracts. 2005 ed. 16th International Biohydrometallurgy Symposium, p. 257-259
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedDifferentiation and identification of iron-oxidizing acidophilic bacteria using cultivation techniques and amplified ribosomal DNA restriction enzyme analysis
  Johnson, D. B., Okibe, N. & Hallberg, K. B., 1 Mar 2005, In: Journal of Microbiological Methods. 60, 3, p. 299-313
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobial ecology and biogeochemical cycling of metals in experimental wetland mesocosms.
  Coupland, K., Hallberg, K. B. & Johnson, D. B., 1 Jan 2005.
  Research output: Contribution to conference › Paper
• PublishedMicrobial populations of mineral spoils and their potential role in biomining.
  Bryan, C. B., Johnson, D. B. & Hallberg, K. B., 1 Jan 2005.
  Research output: Contribution to conference › Paper
• PublishedMicrobiology of a wetland ecosystem constructed to remediate mine drainage from a heavy metal mine.
  Hallberg, K. B. & Johnson, D. B., 1 Feb 2005, In: Science of the Total Environment. 338, 1-2, p. 53-66
  Research output: Contribution to journal › Article › peer-review
• PublishedMines, microbes and micro-organisms – a case of going around in cycles.
  Johnson, D. B., 1 Jan 2005.
  Research output: Contribution to conference › Paper
• PublishedSulfide production and metal removal by mixed populations of bacteria in low pH bioreactors.
  Rowe, O. F., Kimura, S., Hallberg, K. B. & Johnson, D. B., 1 Jan 2005.
  Research output: Contribution to conference › Paper
• PublishedSulfidogenesis at low pH: a novel approach for bioremediating acid rock drainage and recovering soluble metals.
  Johnson, D. B., Rowe, O. F., Kimura, S. & Hallberg, K. B., 1 Jan 2005.
  Research output: Contribution to conference › Paper

2004

• PublishedBioleaching of pyrite by defined mixed populations of moderately thermophilic acidophiles in pH-controlled bioreactors.
  Okibe, N., Johnson, D. B., Tsezos, M. (Editor), Hatzikioseyian, A. (Editor) & Remoudaki, E. (Editor), 1 Jan 2004, p. 165-173.
  Research output: Contribution to conference › Paper
• PublishedBiooxidation of pyrite by defined mixed cultures of moderately thermophilic acidophiles in pH-controlled bioreactors: Significance of microbial interactions.
  Okibe, N. & Johnson, D. B., 5 Sept 2004, In: Biotechnology and Bioengineering. 87, 5, p. 574-583
  Research output: Contribution to journal › Article › peer-review
• PublishedBiotechnological potential of pure cultures and consortia of acidophilic microorganisms.
  Johnson, D. B., Kim, D. J. (Editor), Kim, S. D. (Editor), Lee, J. C. (Editor) & Avraamides, J. (Editor), 1 Jan 2004, p. 107-133.
  Research output: Contribution to conference › Paper
• PublishedComposition of biofilm communities in acidic mine waters as revealed by combined cultivation and biomolecular approaches.
  Kimura, S., Coupland, K., Hallberg, K. B., Johnson, D. B., Tsezos, M. (Editor), Hatzikioseyian, A. (Editor) & Remoudaki, E. (Editor), 1 Jan 2004, p. 1057-1065.
  Research output: Contribution to conference › Paper
• PublishedGeochemistry and microbiology of an impounded subterranean acidic water body at Mynydd Parys, Anglesey, Wales
  Coupland, K. & Johnson, D. B., 1 Apr 2004, In: Geobiology. 2, 2, p. 77-86
  Research output: Contribution to journal › Article › peer-review
• PublishedMicrobial populations in surface spoil at the abandoned Mynydd Parys copper mines.
  Bryan, C. G., Hallberg, K. B., Johnson, D. B., Jarvis, A. P. (Editor), Dudgeon, B. A. (Editor) & Younger, P. L. (Editor), 1 Jan 2004, p. 107-112.
  Research output: Contribution to conference › Paper
• PublishedSulfate reduction at low pH by mixed cultures of acidophilic bacteria.
  Sen, A. M., Kimura, S., Hallberg, K. B., Johnson, D. B., Tsezos, M. (Editor), Hatzikioseyian, A. (Editor) & Remoudaki, E. (Editor), 1 Jan 2004, p. 1179-1186.
  Research output: Contribution to conference › Paper
• PublishedSurvival of acidophilic bacteria under conditions of substrate depletion that occur during culture storage.
  Johnson, D. B., Bruhn, D. F., Roberto, F. F., Tsezos, M. (Editor), Hatzikioseyian, A. (Editor) & Remoudaki, E. (Editor), 1 Jan 2004, p. 1195-1203.
  Research output: Contribution to conference › Paper

2003

• PublishedAnalysis of the microbial composition of macroscopic “streamer” growths in acid mine drainage using a combination of terminal restriction enzyme fragment length polymorphism and fluorescent in situ hybridisation.
  Coupland, K., Kimura, S., Hallberg, K. B. & Johnson, D. B., 1 Jan 2003.
  Research output: Contribution to conference › Paper
• PublishedEnumeration and characterization of acidophilic microorganisms isolated from a pilot plant stirred-tank bioleaching operation
  Okibe, N., Gericke, M., Hallberg, K. B. & Johnson, B., 1 Apr 2003, In: Applied and Environmental Microbiology. 69, 4, p. 1936-1943
  Research output: Contribution to journal › Article › peer-review
• PublishedImportance of microbial ecology in the development of sustainable technologies for mineral processing and wastewater treatment.
  Johnson, D. B., 1 Jan 2003, p. 1-17.
  Research output: Contribution to conference › Paper
• PublishedNovel acidophiles isolated from moderately acidic mine drainage waters
  Hallberg, K. B. & Johnson, B., 1 Oct 2003, In: Hydrometallurgy. 71, 1-2, p. 139-148
  Research output: Contribution to journal › Article › peer-review
• PublishedNovel thermo-acidophilic bacteria isolated from geothermal sites in Yellowstone National Park: physiological and phylogenetic characteristics.
  Johnson, D. B., Okibe, N. & Roberto, F. F., 1 Jul 2003, In: Archives of Microbiology. 180, 1, p. 60-68
  Research output: Contribution to journal › Article › peer-review
• PublishedThe microbiology of acidic mine waters.
  Johnson, D. B. & Hallberg, K., 1 Sept 2003, In: Research in Microbiology. 154, 7, p. 466-473
  Research output: Contribution to journal › Article › peer-review

2002

• PublishedA comparative study of the microbiology of soils managed under organic and conventional regimes.
  Shannon, D., Sen, A. M. & Johnson, D. B., 1 Sept 2002, In: Soil Use and Management. 18, Supplement S, p. 274-283
  Research output: Contribution to journal › Article › peer-review
• PublishedBioleaching of pyrite at low pH and low redox potentials by novel mesophilic Gram-positive bacteria.
  Yahya, A. & Johnson, D. B., 1 Feb 2002, In: Hydrometallurgy. 63, 2, p. 181-188
  Research output: Contribution to journal › Article › peer-review
• PublishedEcology and biodiversity of extremely acidophilic microorganisms.
  Rawlings, D. E. & Johnson, D. B., 1 Jan 2002
  Research output: Non-textual form › Web publication/site
• PublishedPassive mine water treatment at the former Wheal Jane tin mine, Cornwall: important biogeochemical and microbiological lessons
  Hallberg, K. B., Johnson, D. B. & Nuttall, C. A. (Editor), 1 Jan 2002, Mine Water Treatment: a Decade of Progress. 2002 ed. HERO, p. 143-151
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedPassive treatment of acidic mine waters in subsurface-flow systems: exploring RAPS and permeable reactive barriers
  Younger, P. L., Jayaweera, A., Elliot, A., Wood, R., Amos, P., Daugherty, A., Martin, A., Bowden, L., Aplin, A., Johnson, D. B. & Nuttall, C. A. (Editor), 1 Jan 2002, Mine Water Treatment: a Decade of Progress. 2002 ed. HERO, p. 40-50
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedReduction of ferric iron by acidophilic heterotrophic bacteria: evidence for constitutive and inducible enzyme systems in Acidiphilium spp.
  Johnson, D. B. & Bridge, T. A., 1 Feb 2002, In: Journal of Applied Microbiology. 92, 2, p. 315-321
  Research output: Contribution to journal › Article › peer-review
• PublishedThe effects of pesticides on soil microflora.
  Jones, S. E., Johnson, D. B., Young, J. E. (Editor), Griffin, M. N. (Editor), Alford, D. V. (Editor) & Oglivy, S. E. (Editor), 1 Jan 2002, Reducing Agrochemical Use on the Arable Farm: The Talisman and Scarab Projects.. 2002 ed. Department for Environment, Food & Rural Affairs, p. 255-276
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedToxicity of flotation reagents to moderately thermophilic bioleaching microorganisms
  Okibe, N. & Johnson, D. B., 1 Dec 2002, In: Biotechnology Letters. 24, 23, p. 2011-2016
  Research output: Contribution to journal › Article › peer-review

2001

• PublishedAromatic compound catabolism by a novel acidophilic bacterium.
  Hallberg, K. B., Johnson, D. B. & Williams, P. A., 1 Jan 2001, p. 37.
  Research output: Contribution to conference › Paper
• PublishedAromatic compound degradation by novel acidophilic bacteria with potential use for the treatment of waste-water containing organic and inorganic pollutants
  Hallberg, K. B., Williams, P. A. & Johnson, D. B., 1 Jan 2001, p. 28.
  Research output: Contribution to conference › Paper
• PublishedBiodiversity of acidophilic moderate thermophiles isolated from two sites in Yellowstone National Park, and their roles in the dissimilatory oxido-reduction of iron.
  Johnson, D. B., Body, D. A., Bridge, T. A., Bruhn, D. F., Roberto, F. F., Reysenbach, A. L. (Editor), Voytek, M. (Editor) & Mancinelli, R. (Editor), 1 Jan 2001, Thermophiles: Biodiversity: Ecology and Evolution. 2001 ed. Kluwer Academic/Plenum Publishers, p. 23-39
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedBiodiversity of acidophilic prokaryotes
  Hallberg, K. B. & Johnson, D. B., 1 Jan 2001, In: Advances in Applied Microbiology. 49, p. 37-84
  Research output: Contribution to journal › Article › peer-review
• PublishedBioleaching of pyrite by defined mixed cultures of moderately thermophilic acidophiles.
  Okibe, N., Johnson, D. B., Ciminelli, V. S. (Editor) & Garcia Jr, O. (Editor), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 443-451
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedBiological versus abiotic oxidation of iron in acid mine drainage waters: an important role for moderately acidophilic, iron-oxidising bacteria.
  Dennison, F., Johnson, D. B., Sen, A. M., Hallberg, K. B., Ciminelli, V. S. (Editor) & Garcia Jr, O. (Editor), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 493-501
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedGenus II. Leptospirillum
  Johnson, D. B., Boone, D. R. (Editor) & Castenholtz, R. W. (Editor), 1 Jan 2001, Bergey's Manual of Systematic Bacteriology: Archaea and the Deeply Branching and Phototrophic Bacteria v. 1. 2001 ed. Springer, p. 453-457
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedImportance of microbial ecology in the development of new mineral technologies.
  Johnson, D. B., 1 Feb 2001, In: Hydrometallurgy. 59, 2-3, p. 147-157
  Research output: Contribution to journal › Article › peer-review
• PublishedIsolation and phylogenetic characterisation of acidophilic microorganisms indigenous to acidic drainage wartes at an abandoned Norwegian copper mine
  Johnson, D. B., Rolfe, S., Hallberg, K. & Iversen, E., 1 Oct 2001, In: Environmental Microbiology. 3, 10, p. 630-637
  Research output: Contribution to journal › Article › peer-review
• PublishedOxidative dissolution of sulfide minerals by defined mixed populations of moderately thermophilic mmicroorganisms
  Okibe, N. & Johnson, D. B., 1 Jan 2001, p. 39.
  Research output: Contribution to conference › Paper
• PublishedPartial characterisation of a colored organic metabolite isolated from cultures of Acidithiobacillus ferrooxidans grown on elemental sulfur.
  Ceskova, P., Zak, Z., Havlis, J., Johnson, D. B., Janiczek, O., Mandl, M., Ciminelli, V. S. (Editor) & Garcia Jr, O. (Editor), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 363-367
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedRemediation of acidic waste waters using immobilised, acidophilic sulfate-reducing bacteria.
  Kolmert, A. & Johnson, D. B., 1 Aug 2001, In: Journal of Chemical Technology and Biotechnology. 76, 8, p. 836-843
  Research output: Contribution to journal › Article › peer-review
• PublishedRole of pure and mixed cultures of gram-positive eubacteria in mineral leaching.
  Johnson, D. B., Bacelar-Nicolau, P., Okibe, N., Yahya, A., Hallberg, K. B., Ciminelli, V. S. (Editor) & Garcia Jr, O. (Editor), 1 Jan 2001, Biohydrometallurgy: Fundamentals: Technology and Sustainable Development. 2001 ed. Elsevier, p. 461-470
  Research output: Chapter in Book/Report/Conference proceeding › Chapter
• PublishedSerological studies of acidophilic heterotrophic bacteria: are proteins or LPS its main antigenic components?
  Coto, O., Dziurla, M. A., Johnson, D. B. & Hallberg, K. B., 1 Jan 2001.
  Research output: Contribution to conference › Paper

2000

• PublishedA microbiological survey of Montserrat Island hydrothermal biotopes.
  Atkinson, T., Cairns, S., Cowan, D. A., Danson, M. J., Hough, D. W., Johnson, D. B., Norris, P. R., Raven, N., Robinson, C., Robson, R. & Sharp, R. J., 1 Oct 2000, In: Extremophiles. 4, 5, p. 305-313
  Research output: Contribution to journal › Article › peer-review
• PublishedReductive dissolution of ferric iron minerals by Acidiphilium SJH.
  Bridge, T. A. & Johnson, D. B., 1 Jul 2000, In: Geomicrobiology Journal. 17, 3, p. 193-206
  Research output: Contribution to journal › Article › peer-review

• Development of a protocol for bioprocessing pyrrhotite waste

  05/01/2022 – 30/08/2023 (Finished)

• CROCODILE: first of a kind commercial Compact system for the efficient Recovery Of CObalt Designed with novel Integrated LEading technologies

  01/06/2018 – 31/12/2199 (Active)

  Description

  The CROCODILE project will showcase innovative metallurgical systems based on advanced pyro-, hydro-, bio-, iono- and electrometallurgy technologies for the recovery of cobalt and the production of cobalt metal and upstream products from a wide variety of secondary and primary European resources. CROCODILE will demonstrate the synergetic approaches and the integration of the innovative metallurgical systems within existing recovery processes of cobalt from primary and secondary sources at different locations in Europe, to enhance their efficiency, improve their economic and environmental values, and will provide a zero-waste strategy for important waste streams rich in cobalt such as batteries.

  Links:

  • https://h2020-crocodile.eu/

• COG3: Geology, geometallurgy and geomicrobiology of cobalt resources

  01/05/2015 – 30/06/2020 (Finished)

  Links:

  • http://www.nhm.ac.uk/our-science/our-work/sustainability/cog3-cobalt-project.html

• PARMIN— Geomicrobiology of Parys mine, Wales

  01/04/2015 – 24/08/2018 (Finished)

• New Mining Concept for Extracting Metals from Deep Ore Deposits using Biotechnology - BioMOre (Grant No. 642456)

  01/02/2015 – 01/08/2022 (Finished)

  Links:

  • https://www.biomore.info/project/

• The Role of Microbiological Communities in Passive Treatment of Coal Mine Waters

  01/09/2014 – 17/03/2016 (Finished)

• Biorefining of metallic wastes into new functional materials (B3)

  29/08/2014 – 01/08/2022 (Finished)

• Novel sustainable approaches for bioremediation and metal recovery

  01/12/2013 – 01/08/2019 (Finished)

• CoG3

  01/09/2013 – 07/09/2015 (Finished)

• Biorefining metallic wastes into new functional materials

  01/08/2013 – 11/11/2013 (Finished)

• Reductive bio-processing of sand

  01/08/2012 – 31/03/2013 (Finished)

• Reductive bio-processing of a silver sulfide ore

  01/05/2012 – 14/02/2013 (Finished)

• Bio-reduction systems for application in bohydrometallurgy

  01/03/2012 – 18/07/2013 (Finished)

• Copper Extraction via Reductive Dissolution of Oxidised Ores

  01/07/2011 – 10/01/2013 (Finished)

• Reductive dissolution of chalcopyrite

  01/05/2011 – 31/08/2015 (Finished)

• International Biohydrometallurgy Symposium 2009

  01/09/2009 – 31/05/2010 (Finished)

• An innovative and cost effective approach for the selective recovery of metals

  01/06/2009 – 14/02/2011 (Finished)

• Nano-particle products from new mineral resources in Europe - ProMine

  01/05/2009 – 01/08/2017 (Finished)

  Links:

  • http://promine.gtk.fi/

• BIOPROCESSING OF LOW-GRADE URANIUM ORES

  27/03/2009 – 27/03/2011 (Finished)

• Investigation of the potential for bioprocessing nickel laterite ores

  01/11/2008 – 31/12/2009 (Finished)

• Travel Grant: Conference in South Africa

  01/09/2008 – 23/03/2009 (Finished)

• Rs-Integrated Strategies For Mineral B

  01/01/2007 – 27/03/2011 (Finished)

• Uk China Network - Workshop In Uk

  01/01/2007 – 31/07/2009 (Finished)

• Cec-Biomine

  01/11/2004 – 31/03/2011 (Finished)

• Cec-Bioshale

  01/11/2004 – 30/08/2009 (Finished)

  Links:

  • http://www.brgm.eu/project/bioshale-search-sustainable-way-of-exploiting-black-shale-ores-using-biotechnologies

• Development & Application Of Novel Biolo

  01/11/2004 – 31/08/2009 (Finished)

• Development & Application Of Novel Biolo

  01/10/2004 – 12/12/2007 (Finished)